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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Pnpla2, patatin-like phospholipase domain containing 2
Sequence ID:NM_001163689
NM_025802
NR_028142
Entrez Gene ID:66853
Ensembl ID:ENSMUSG00000025509

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F5|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 141455206 - 141460094

 Exon Info From UCSC:
NM_001163689
NM_025802

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5027544Full LengthBC019188patatin-like phospholipase domain containing 2
5151911Full LengthBC044781patatin-like phospholipase domain containing 2
30024535Full LengthBC064747patatin-like phospholipase domain containing 2
3157328IncompleteBC026807patatin-like phospholipase domain containing 2
4982482IncompleteBC034190patatin-like phospholipase domain containing 2
5149686IncompleteBC054825patatin-like phospholipase domain containing 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080078  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001163689 NP_001157161 Q8BJ56 EC 3.1.1.3  
NM_025802 NP_080078     Patatin

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U89431 AAC36536 Q8BJ56 EC 3.1.1.3
BC019188 AAH19188 Q8BJ56 EC 3.1.1.3
BC044781 AAH44781 Q8BJ56 EC 3.1.1.3
BC064747 AAH64747 Q8BJ56 EC 3.1.1.3
AY510273 AAS48458 Q8BJ56 EC 3.1.1.3
AY731699 AAU33824 Q8BJ56 EC 3.1.1.3
AY894805 AAW81963 Q8BJ56 EC 3.1.1.3
AK002826 BAB22387 Q8BJ56 EC 3.1.1.3
AK003207 BAB22643 Q8BJ56 EC 3.1.1.3
AK031609 BAC27476 Q8BJ56 EC 3.1.1.3
AK150184 BAE29364 Q8BJ56 EC 3.1.1.3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pnpla2 NP_001157161 R.norvegicus Pnpla2 361676   NP_001101979 98
H.sapiens PNPLA2 57104 Gene Info NP_065109 88
C.elegans C05D11.7 175910   NP_741196 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)