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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Syf2, SYF2 homolog, RNA splicing factor (S. cerevisiae)
Sequence ID:NM_026780
Entrez Gene ID:68592
Ensembl ID:ENSMUSG00000028821

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, synovium, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D3|4 65.7 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 134930979 - 134937537

NM_026780 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
139134486894134486932
40144134487094134487198
145270134490370134490495
271388134490846134490963
389479134491288134491378
480578134491897134491995
5791276134492754134493451

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1380946Full LengthBC051484SYF2 homolog, RNA splicing factor (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081056  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026780 NP_081056 Q9D198 SYF2

Related Sequences

 
mRNAGenPeptSwissProt
BC051484 AAH51484 Q9D198
AY033432 AAK54459 Q9D198
AK003787 BAB22995 Q9D198
AK152794 BAE31500 Q9D198

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Syf2 NP_081056 R.norvegicus Syf2 170933   NP_596908 99
H.sapiens SYF2 25949 Gene Info NP_056299 91
D.melanogaster CG12343 36143   NP_610617 57
A.gambiae AgaP_AGAP010515 1275252   XP_314488 54
C.elegans K04G7.11 176003   NP_498566 51
A.thaliana AT2G16860 816187   NP_565396 37
N.crassa NCU00361 3873859   XP_957832 36
S.pombe SPBC3E7.13c 2540611   NP_596100 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)