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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nup43, nucleoporin 43
Sequence ID:NM_145706
Entrez Gene ID:69912
Ensembl ID:ENSMUSG00000040034

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 A1|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 7667536 - 7678876

NM_145706 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
117873873017387478
17930173877997387921
30237973893507389427
38056073907367390916
56169673933827393517
69784873948037394954
84997173960377396159
972129073983657398683

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3156436Full LengthBC011060nucleoporin 43
5255413IncompleteBC052530nucleoporin 43

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_663752  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145706 NP_663752 P59235
Q921S9
WD40

Related Sequences

 
mRNAGenPeptSwissProt
BC011060 AAH11060 Q921S9
BC052530 AAH52530 Q7TT04
AK012191 BAC25359 Q8BT98
AK090019 BAC41049 P59235
AK141339 BAE24655 Q3URN3
AK146262 BAE27021 Q3UJY4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nup43 NP_663752 H.sapiens NUP43 348995 Gene Info NP_942590 94
D.melanogaster CG7671 42209   NP_650716 30
A.gambiae AgaP_AGAP000480 1271759   XP_310612 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)