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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Mrpl38, mitochondrial ribosomal protein L38
Sequence ID:NM_024177
Entrez Gene ID:60441
Ensembl ID:ENSMUSG00000020775

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E2|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 116138029 - 116138812

NM_024177 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1314115993130115993443
315451115993733115993869
452610115994056115994214
611656115995569115995614
657729115995746115995818
730938115996221115996429
9391073115996504115996638
10741253115999755115999934
12541411116000024116000181

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1493919Full LengthBC030739mitochondrial ribosomal protein L38
3593984Full LengthBC002319mitochondrial ribosomal protein L38

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077139  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024177 NP_077139 Q8K2M0 PBP

Related Sequences

 
mRNAGenPeptSwissProt
BC002319 AAH02319 Q8K2M0
BC030739 AAH30739 Q8K2M0
AK088343 BAC40295 Q8K2M0
AK151598 BAE30538 Q8K2M0
AK159033 BAE34778 Q8K2M0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Mrpl38 NP_077139 R.norvegicus Mrpl38 303685   NP_001009369 95
H.sapiens MRPL38 64978 Gene Info NP_115867 87
A.gambiae AgaP_AGAP000652 1272436   XP_311178 45
D.melanogaster mRpL38 32375   NP_511152 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)