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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Edf1, Endothelial differentiation-related factor 1
Sequence ID:NM_021519
Entrez Gene ID:59022
Ensembl ID:ENSMUSG00000015092

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 A3|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 25557899 - 25562082

NM_021519 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5250117Full LengthBC023472endothelial differentiation-related factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067494  

Protein Infomation

NM_021519 NP_067494 Q9JMG1 HTH_3

Related Sequences

BC023472 AAH23472 Q9JMG1
AB030185 BAA92749 Q9JMG1
AK002345 BAB22026 Q9JMG1
AK003557 BAB22854 Q9JMG1
AK010191 BAB26758 Q9JMG1
AJ309569 CAC32040 Q9JMG1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Edf1 NP_067494 R.norvegicus Edf1 296570   NP_001100027 100
H.sapiens EDF1 8721 Gene Info NP_003783 99
A.gambiae AgaP_AGAP004990 1275816   XP_315094 65
D.melanogaster mbf1 39842   NP_524110 65
A.thaliana MBF1B 825037   NP_191427 55
C.elegans mbf-1 178071   NP_502166 55
A.thaliana MBF1A 818868   NP_565981 54
S.pombe SPBC83.17 2541192   NP_595650 51
S.cerevisiae MBF1 854474   NP_014942 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)