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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clta, clathrin, light polypeptide (Lca)
Sequence ID:NM_001080384
NM_001080385
NM_001080386
NM_016760
Entrez Gene ID:12757
Ensembl ID:ENSMUSG00000028478

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 B1|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 44010103 - 44012503

 Exon Info From UCSC:
NM_001080384
NM_001080385
NM_001080386
NM_016760

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3154277Full LengthBC057660clathrin, light polypeptide (Lca)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058040  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001080384 NP_001073853    
NM_001080385 NP_001073854    
NM_001080386 NP_001073855    
NM_016760 NP_058040 O08585 Clathrin_lg_ch

Related Sequences

 
mRNAGenPeptSwissProt
U91848 AAB51286 O08585
BC057660 AAH57660 Q6PFA2
AK146965 BAE27571 Q6PFA2
AK149761 BAE29067 Q6PFA2
AK150148 BAE29342 Q6PFA2
AK152397 BAE31185 Q6PFA2
AK168130 BAE40099 Q3THU7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clta NP_001073855 R.norvegicus Clta 83800   NP_114180 99
H.sapiens CLTA 1211 Gene Info NP_001824 99
A.gambiae AgaP_AGAP010608 1275332   XP_558141 44
D.melanogaster Clc 40221   NP_001163480 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta