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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hdac6, histone deacetylase 6
Sequence ID:NM_001130416
NM_010413
Entrez Gene ID:15185
Ensembl ID:ENSMUSG00000031161

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X A1.1|X 2.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 7930127 - 7947244

 Exon Info From UCSC:
NM_001130416
NM_010413

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5352032Full LengthBC041105histone deacetylase 6
5040358IncompleteBC033428histone deacetylase 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034543  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001130416 NP_001123888      
NM_010413 NP_034543 Q9Z2V5 EC 3.5.1.98 Hist_deacetyl
zf-UBP

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF006603 AAD09835 Q9Z2V5 EC 3.5.1.98
BC041105 AAH41105 Q8CGC3  
AK148144 BAE28372 Q3UG37  
AK154099 BAE32376 Q3U4Q5  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hdac6 NP_001123888 R.norvegicus Hdac6 84581   XP_228753 92
H.sapiens HDAC6 10013 Gene Info NP_006035 79
D.melanogaster HDAC6 32461   NP_727842 47
A.gambiae AgaP_AGAP000532 1271709   XP_310554 46
C.elegans F41H10.6 177316   NP_500787 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta