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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lgi1, leucine-rich repeat LGI family, member 1
Sequence ID:NM_020278
Entrez Gene ID:56839
Ensembl ID:ENSMUSG00000067242

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 C3|19

Chromosomal Position (from UCSC)

Chromosomal Position:19: 38264786 - 38306808

NM_020278 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13163833927138339586
3173883834006438340135
3894603835845938358530
4615323835863138358702
5336043837241838372489
6057743837519738375366
7759393837565038375814
94042593838010938383428

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6839091Full LengthBC066090leucine-rich repeat LGI family, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_064674  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020278 NP_064674 Q9JIA1 LRR_1
EPTP

Related Sequences

 
mRNAGenPeptSwissProt
AF246818 AAF87077 Q9JIA1
BC066090 AAH66090 Q9JIA1
AK045443 BAC32370 Q9JIA1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lgi1 NP_064674 R.norvegicus Lgi1 252892   NP_665712 99
H.sapiens LGI1 9211 Gene Info NP_005088 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)