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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Pdcd6ip, programmed cell death 6 interacting protein
Sequence ID:NM_001164677
Entrez Gene ID:18571
Ensembl ID:ENSMUSG00000032504

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9|9 F2

Chromosomal Position (from UCSC)

Chromosomal Position:9: 113654868 - 113708220

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4038684Full LengthBC026823programmed cell death 6 interacting protein
6529850Full LengthBC051123programmed cell death 6 interacting protein
3494634IncompleteBC002261programmed cell death 6 interacting protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035182  

Protein Infomation

NM_001164677 NP_001158149    
NM_001164678 NP_001158150    
NM_011052 NP_035182 Q9WU78 BRO1

Related Sequences

AF119955 AAD26813 Q9WU78
AF176514 AAD53115 Q9WU78
BC002261 AAH02261 Q9WU78
BC026823 AAH26823 Q9WU78
BC051123 AAH51123 Q80Y09
AK031256 BAC27323 Q9WU78
AK129340 BAC98150 Q6ZPS9
AK167574 BAE39637 Q9WU78
AK169704 BAE41316 Q9WU78
AJ005073 CAA06329 Q9WU78
AJ005074 CAA06330 Q9WU78

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Pdcd6ip NP_001158150 R.norvegicus Pdcd6ip 501083   NP_001025081 98
H.sapiens PDCD6IP 10015 Gene Info NP_001155901 95
D.melanogaster ALiX 43330   NP_651582 45
A.gambiae AgaP_AGAP005531 1276214   XP_315531 43
C.elegans alx-1 176410   NP_001022713 42
A.thaliana AT1G15130 838077   NP_172965 31
S.cerevisiae RIM20 854449   NP_014918 29
N.crassa NCU05876 3875999   XP_959867 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)