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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Trappc4, Trafficking protein particle complex 4
Sequence ID:NM_021789
Entrez Gene ID:60409
Ensembl ID:ENSMUSG00000032112

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9|9 B

Chromosomal Position (from UCSC)

Chromosomal Position:9: 44403768 - 44407507

NM_021789 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
293684421184144212180
3694954421241644212542
4965994421332544213428
6007744421488644215060
77511964421520944215630

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5401311Full LengthBC038898trafficking protein particle complex 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_068561  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021789 NP_068561 Q544R8
Q9ES56
Sybindin

Related Sequences

 
mRNAGenPeptSwissProt
AF233340 AAG24950 Q544R8
Q9ES56
BC038898 AAH38898 Q544R8
Q9ES56
AK032168 BAC27737 Q544R8
Q9ES56
AK005276 BAE43192 Q3V493

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Trappc4 NP_068561 R.norvegicus Trappc4 367073   NP_001003708 99
H.sapiens TRAPPC4 51399 Gene Info NP_057230 98
A.gambiae AgaP_AGAP008106 1277847   XP_317351 61
D.melanogaster Trs23 34197   NP_609247 60
A.thaliana AT5G02280 831680   NP_195848 58
S.pombe SPBC3B9.12 2540976   NP_596670 53
C.elegans F36D4.2 185357   NP_505435 50
S.cerevisiae TRS23 851833   NP_010532 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)