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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Sep15, selenoprotein
Sequence ID:NM_053102
Entrez Gene ID:93684
Ensembl ID:ENSMUSG00000037072

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 H3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 144570478 - 144597676

NM_053102 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1373144233390144233762
374541144240549144240716
542605144253575144253638
606655144257864144257913
6561509144259786144260639

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5003585Full LengthBC019792selenoprotein
3482046IncompleteBC010481selenoprotein

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_053102 NP_444332    

Related Sequences

 
mRNAGenPeptSwissProt
AF288740 AAG31765 Q9ERR7
BC019792 AAH19792 Q9ERR7
AK020419 BAC55255 Q9ERR7
AK159085 BAE34803 Q9ERR7
AK159353 BAE35012 Q9ERR7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sep15 NP_444332 R.norvegicus Sep15 113922   NP_579831 99
H.sapiens SEP15 9403 Gene Info NP_004252 93
D.melanogaster CG7484 39969   NP_649000 51
A.gambiae AgaP_AGAP004986 1275812   XP_315090 49
C.elegans Y76B12C.3 176999   NP_500152 43
A.thaliana AT1G05720 837079   NP_563747 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)