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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Sycp3, synaptonemal complex protein 3
Sequence ID:NM_011517
Entrez Gene ID:20962
Ensembl ID:ENSMUSG00000020059

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10|10 C

Chromosomal Position (from UCSC)

Chromosomal Position:10: 88459663 - 88473235

NM_011517 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11268792233187922456
1272698792520587925347
2703338792610787926170
3343688792658087926614
3694868792918387929300
4875868793002787930126
5876858793229087932388
6867908793542087935524
79111218793564987935979

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861529Full LengthBC138509synaptonemal complex protein 3
40130356Full LengthBC132079synaptonemal complex protein 3
6774324IncompleteBC048483synaptonemal complex protein 3
30301211IncompleteBC099552synaptonemal complex protein 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035647  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011517 NP_035647 P70281 Cor1

Related Sequences

 
mRNAGenPeptSwissProt
BC132079 AAI32080 A2RSE7
BC138509 AAI38510 A2RSE7
AK131949 BAE20894 P70281
Y08485 CAA69719 P70281

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sycp3 NP_035647 R.norvegicus LOC100362033 100362033   XP_002729826 89
H.sapiens SYCP3 50511 Gene Info NP_710161 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)