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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Gpc1, glypican 1
Sequence ID:NM_016696
Entrez Gene ID:14733
Ensembl ID:ENSMUSG00000034220

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 D|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 92831685 - 92860196

NM_016696 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14129472826294728673
4135719474992394750081
5729609475143494751822
96111269475248394752648
112712579475356394753693
125813779475382494753943
137815119475404894754181
151216879475443194754606
168835529475490894756772

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6810413Full LengthBC062902glypican 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057905  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016696 NP_057905 Q9QZF2
Q3U379
Glypican

Related Sequences

 
mRNAGenPeptSwissProt
AF185613 AAD56243 Q9QZF2
Q3U379
BC062902 AAH62902 Q9QZF2
Q3U379
AK031768 BAC27542 Q8CD04
AK154584 BAE32692 Q3U3U3
AK154899 BAE32910 Q9QZF2
Q3U379

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Gpc1 NP_057905 H.sapiens GPC1 2817 Gene Info NP_002072 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)