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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clcn4-2, chloride channel 4-2
Sequence ID:NM_011334
Entrez Gene ID:12727
Ensembl ID:ENSMUSG00000000605

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A1|7 4.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 7283407 - 7298747

 Exon Info From UCSC:
NM_011334

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3586154Full LengthBC005553chloride channel 4-2
6391053Full LengthBC110668chloride channel 4-2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035464  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011334 NP_035464 Q8CBL5
Q61418
CBS
Voltage_CLC

Related Sequences

 
mRNAGenPeptSwissProt
BC005553 AAH05553 Q99JZ2
BC110668 AAI10669 Q61418
DQ186662 ABA28317 Q3LRV6
AK035804 BAC29192 Q8CBL5
AK050833 BAC34428 Q8BQG0
Z49916 CAA90150 Q61418

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clcn4-2 NP_035464 H.sapiens CLCN4 1183 Gene Info NP_001821 99
R.norvegicus Clcn4 60586   NP_071534 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)