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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Manf, mesencephalic astrocyte-derived neurotrophic factor
Sequence ID:NM_029103
Entrez Gene ID:74840
Ensembl ID:ENSMUSG00000032575

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F1|9 59.7 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 106889082 - 106891912

NM_029103 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11811106789745106791555
18121953106792491106792632
19542081106793401106793528
20822206106794144106794268

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6742574Full LengthBC048616arginine-rich, mutated in early stage tumors
4983660IncompleteBC038901arginine-rich, mutated in early stage tumors

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_029103 NP_083379 Q9CXI5  

Related Sequences

 
mRNAGenPeptSwissProt
BC048616 AAH48616 Q80ZP8
AK014338 BAB29281 Q9CXI5
AK131997 BAE20927 Q3TMX5
AK165646 BAE38314 Q3TMX5
AB009291 BAF80624 A8C1V1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Manf NP_083379 H.sapiens MANF 7873 Gene Info NP_006001 98
A.gambiae AgaP_AGAP003016 1272937   XP_311862 55
C.elegans Y54G2A.23 177074   NP_500273 54
D.melanogaster Manf 41983   NP_477445 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)