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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Psmd13, proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
Sequence ID:NM_011875
Entrez Gene ID:23997
Ensembl ID:ENSMUSG00000025487

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7|7 F5

Chromosomal Position (from UCSC)

Chromosomal Position:7: 140882432 - 140898388

 Exon Info From UCSC:
NM_011875

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862206Full LengthBC139184proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
8862209Full LengthBC139187proteasome (prosome, macropain) 26S subunit, non-ATPase, 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036005  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011875 NP_036005 Q9WVJ2 PCI

Related Sequences

 
mRNAGenPeptSwissProt
AF107838 AAD43443 Q9WVJ2
BC139184 AAI39185 B2RT97
BC139187 AAI39188 B2RT97
AK051078 BAC34519 Q9WVJ2
AK075936 BAC36066 Q9WVJ2
AK081160 BAC38150 Q9WVJ2
AK145654 BAE26568 Q9WVJ2
AK163017 BAE37156 Q9WVJ2
AK167169 BAE39307 Q9WVJ2
AK171504 BAE42495 Q9WVJ2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Psmd13 NP_036005 R.norvegicus Psmd13 365388   NP_001102395 99
H.sapiens PSMD13 5719 Gene Info NP_002808 97
A.gambiae AgaP_AGAP001651 1281522   XP_321445 49
D.melanogaster Rpn9 42802   NP_651177 46
C.elegans rpn-9 174715   NP_496405 43
N.crassa NCU02374 3875949   XP_959795 40
A.thaliana AT4G19006 827638   NP_680721 39
A.thaliana AT5G45620 834602   NP_199375 38
S.pombe rpn9 2543114   NP_593594 37
S.cerevisiae RPN9 852037   NP_010715 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)