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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Pdpn, podoplanin
Sequence ID:NM_010329
Entrez Gene ID:14726
Ensembl ID:ENSMUSG00000028583

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 E1|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 143268317 - 143299293

NM_010329 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11005142857324142858328
10061117142859090142859201
11181156142860425142860463
11571313142863802142863958
13141450142865973142866109
14511769142889091142889409

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4985288Full LengthBC026551podoplanin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034459  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010329 NP_034459 Q62011 Podoplanin

Related Sequences

 
mRNAGenPeptSwissProt
M96645 AAA37724 Q62011
M73748 AAA39866 Q62011
BC026551 AAH26551 Q62011
AK158855 BAE34695 Q62011
AJ250246 CAB58997 Q62011
AJ297944 CAC16152 Q62011

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pdpn NP_034459 R.norvegicus Pdpn 54320   NP_062231 81
H.sapiens PDPN 10630 Gene Info NP_006465 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)