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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Apoa5, apolipoprotein A-V
Sequence ID:NM_080434
Entrez Gene ID:66113
Ensembl ID:ENSMUSG00000032079

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9|9 B

Chromosomal Position (from UCSC)

Chromosomal Position:9: 46268607 - 46271411

NM_080434 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1124607669046076701
13694607716346077219
701694607730846077407
17023214607785046080001

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4196296Full LengthBC011198apolipoprotein A-V

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_536682  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_080434 NP_536682 Q8C7G5 Apolipoprotein

Related Sequences

 
mRNAGenPeptSwissProt
AF327059 AAG49600 Q8C7G5
BC011198 AAH11198 Q8C7G5
AK050280 BAC34163 Q8C7G5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Apoa5 NP_536682 R.norvegicus Apoa5 140638   NP_542143 91
H.sapiens APOA5 116519 Gene Info NP_001160070 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)