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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ldb3, LIM domain binding 3
Sequence ID:NM_001039071
NM_001039072
NM_001039073
NM_001039074
NM_001039075
NM_001039076
NM_011918
Entrez Gene ID:24131
Ensembl ID:ENSMUSG00000021798

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:14 B|14

Chromosomal Position (from UCSC)

Chromosomal Position:14: 34529271 - 34588634

 Exon Info From UCSC:
NM_001039071
NM_001039072
NM_001039073
NM_001039074
NM_001039075
NM_001039076
NM_011918

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861815Full LengthBC138793LIM domain binding 3
9053978Full LengthBC145420LIM domain binding 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036048  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001039071 NP_001034160    
NM_001039072 NP_001034161    
NM_001039073 NP_001034162    
NM_001039074 NP_001034163    
NM_001039075 NP_001034164    
NM_001039076 NP_001034165    
NM_011918 NP_036048 Q9JKS4 LIM
PDZ

Related Sequences

 
mRNAGenPeptSwissProt
AF114378 AAD42950 Q9JKS4
AF114379 AAD42951 Q9JKS4
AF228057 AAF33847 Q9JKS4
AF228058 AAF33848 Q9JKS4
BC099596 AAH99596 Q9JKS4
BC138793 AAI38794 Q9JKS4
BC145420 AAI45421 Q9JKS4
AY206011 AAO26187 Q9JKS4
AY206012 AAO26188 Q9JKS4
AY206013 AAO26189 Q9JKS4
AY206015 AAO26190 Q9JKS4
AK004020 BAB23128 Q9JKS4
AK172980 BAD32258 Q9JKS4
AK137181 BAE23262 Q9JKS4
AK142292 BAE25016 Q9JKS4
AK162875 BAE37096 Q3TRD4
AJ005621 CAB46747 Q9JKS4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ldb3 NP_001034161 D.melanogaster Zasp52 36740   NP_001027420 36
A.gambiae AgaP_AGAP006901 1270178   XP_308855 35
C.elegans alp-1 177701   NP_001040987 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)