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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cct4, chaperonin containing Tcp1, subunit 4 (delta)
Sequence ID:NM_009837
Entrez Gene ID:12464
Ensembl ID:ENSMUSG00000007739

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 A3.2|11 13.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 22990625 - 23003336

 Exon Info From UCSC:
NM_009837

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6807250Full LengthBC054773chaperonin containing Tcp1, subunit 4 (delta)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033967  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009837 NP_033967 P80315 Cpn60_TCP1

Related Sequences

 
mRNAGenPeptSwissProt
L25913 AAA37418 P80315
BC054773 AAH54773 P80315
AK010634 BAB27078 P80315
Q564F4
AK146242 BAE27006 Q3UJZ8
AK150601 BAE29693 P80315
Q564F4
AK152173 BAE31005 P80315
Q564F4
AK152665 BAE31400 P80315
Q564F4
AK165229 BAE38089 P80315
Q564F4
AK167026 BAE39199 P80315
Q564F4
AK167262 BAE39376 P80315
Q564F4
AK167846 BAE39866 Q3TII0
AK169339 BAE41091 P80315
Q564F4
Z31554 CAA83429 P80315

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cct4 NP_033967 R.norvegicus Cct4 29374   NP_877966 99
H.sapiens CCT4 10575 Gene Info NP_006421 97
A.gambiae AgaP_AGAP009505 1271406   XP_310191 71
D.melanogaster CG5525 34674   NP_609579 71
A.thaliana AT3G18190 821346   NP_188447 66
S.pombe cct4 2540053   NP_595155 66
C.elegans cct-4 174330   NP_495750 64
N.crassa NCU02839 3880278   XP_964129 62
S.cerevisiae CCT4 851412   NP_010138 60
P.falciparum MAL13P1.283 813845   XP_001350289 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta