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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ddx17, DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
Sequence ID:NM_001040187
NM_152806
NM_199079
NM_199080
Entrez Gene ID:67040
Ensembl ID:ENSMUSG00000055065

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 E1|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 79527740 - 79529652

 Exon Info From UCSC:
NM_001040187
NM_152806
NM_199079
NM_199080

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6816663Full LengthBC062910DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
30549388Full LengthBC096036DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
3154379IncompleteBC031802DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
3499349IncompleteBC012249DEAD (Asp-Glu-Ala-Asp) box polypeptide 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_951061  NP_690019  NP_951062  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001040187 NP_001035277 Q501J6 EC 3.6.4.13  
NM_152806 NP_690019 Q8K392   Helicase_C
NM_199079 NP_951061     DEAD
Helicase_C
NM_199080 NP_951062 Q3U741   DEAD
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC027758 AAH27758 Q8K392  
BC038378 AAH38378 Q8K392  
BC062910 AAH62910 Q501J6 EC 3.6.4.13
BC096036 AAH96036 Q501J6 EC 3.6.4.13
AK027954 BAC25680 Q78W10  
AK039888 BAC30474 Q501J6 EC 3.6.4.13
AK151061 BAE30078 Q3U741  
AK152831 BAE31531 Q3U741  
AK152910 BAE31589 Q3U6Y5  
AK161012 BAE36146 Q3TU25  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ddx17 NP_951062 H.sapiens DDX17 10521 Gene Info NP_006377 99
D.melanogaster Rm62 40739   NP_524243 63
A.thaliana AT1G55150 841958   NP_175911 62
A.thaliana AT5G63120 836432   NP_974985 61
A.gambiae AgaP_AGAP004912 1275719   XP_315003 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)