Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col8a2, collagen, type VIII, alpha 2
Sequence ID:NM_199473
Entrez Gene ID:329941
Ensembl ID:ENSMUSG00000056174

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D2.2|4 57.2 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 126296173 - 126297596

NM_199473 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1137125964037125964173
138183125973852125973897
184380125986843125987039
3814331125987623125991573

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6853989Full LengthBC080317collagen, type VIII, alpha 2
30355747Full LengthBC065148collagen, type VIII, alpha 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_955767  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_199473 NP_955767 P25318 C1q
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC065148 AAH65148 P25318
BC080317 AAH80317 P25318
AK131153 BAD21403 P25318
AK037283 BAE20508 Q3V3P8
XM_001477187 XP_001477237  
XM_988918 XP_994012  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col8a2 NP_955767 R.norvegicus Col8a2 313592   XP_233542 99
H.sapiens COL8A2 1296 Gene Info NP_005193 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)