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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Chmp2a, charged multivesicular body protein 2A
Sequence ID:NM_026885
Entrez Gene ID:68953
Ensembl ID:ENSMUSG00000033916

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A2|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 13032018 - 13034744

NM_026885 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11971361735413617550
1982591361763713617698
2603901361778313617913
3915701361799013618169
5717841361917713619390
7859271361998313620125

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4024872Full LengthBC012230chromatin modifying protein 2A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081161  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026885 NP_081161 Q9DB34 ESCRT-III

Related Sequences

 
mRNAGenPeptSwissProt
BC012230 AAH12230 Q9DB34
AK005267 BAB23919 Q9DB34

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chmp2a NP_081161 H.sapiens CHMP2A 27243 Gene Info NP_055268 100
R.norvegicus Chmp2a 365191   NP_001102376 100
D.melanogaster vps2 43164   NP_651455 75
A.gambiae AgaP_AGAP001285 1281892   XP_321862 73
C.elegans Y46G5A.12 174908   NP_496717 69
A.thaliana VPS2.1 815211   NP_565336 58
N.crassa NCU00435 3872837   XP_956699 51
S.cerevisiae DID4 853868   NP_012924 47
S.pombe did4 2543521   NP_593871 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)