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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cln5, Ceroid-lipofuscinosis, neuronal 5
Sequence ID:NM_001033242
Entrez Gene ID:211286
Ensembl ID:ENSMUSG00000022125

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14 E2.3|14 53.56

Chromosomal Position (from UCSC)

Chromosomal Position:14: 103074321 - 103077591

NM_001033242 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1252103469432103469683
253418103470850103471015
419644103472403103472628
6452447103475044103476846

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9055926Full LengthBC141314ceroid-lipofuscinosis, neuronal 5
9055927Full LengthBC141315ceroid-lipofuscinosis, neuronal 5
5251891IncompleteBC025487ceroid-lipofuscinosis, neuronal 5

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001033242 NP_001028414 Q3UMW8  

Related Sequences

 
mRNAGenPeptSwissProt
BC025487 AAH25487 Q3UMW8
BC141314 AAI41315 B2RUP8
BC141315 AAI41316 B2RUP8
AK032293 BAC27797 Q3UMW8
AK144635 BAE25980 Q3UMW8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cln5 NP_001028414 R.norvegicus RGD1564125 310166   XP_226859 93
R.norvegicus Cln5 306128   XP_224477 92
H.sapiens CLN5 1203 Gene Info NP_006484 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)