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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Clic1, chloride intracellular channel 1
Sequence ID:NM_033444
Entrez Gene ID:114584
Ensembl ID:ENSMUSG00000007041

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 19.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35050431 - 35058720

NM_033444 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12443518718735187430
2453543518937935189488
3554803518972535189850
4815873518997735190083
5887693519217135192352
77011593519527435195663

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3498118Full LengthBC004658chloride intracellular channel 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_033444 NP_254279 Q9Z1Q5
Q542F1
 

Related Sequences

 
mRNAGenPeptSwissProt
BC004658 AAH04658 Q9Z1Q5
Q542F1
AK088809 BAC40585 Q9Z1Q5
Q542F1
AK150382 BAE29513 Q9Z1Q5
Q542F1
AK150611 BAE29702 Q9Z1Q5
Q542F1
AK153509 BAE32054 Q9Z1Q5
Q542F1
AK167765 BAE39798 Q3TIP8
AK168262 BAE40210 Q9Z1Q5
Q542F1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clic1 NP_254279 R.norvegicus Clic1 406864   NP_001002807 100
H.sapiens CLIC1 1192 Gene Info NP_001279 98
A.thaliana DHAR1 838544   NP_001077564 30
A.thaliana DHAR2 843864   NP_177662 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)