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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tbx1, T-box 1
Sequence ID:NM_011532
Entrez Gene ID:21380
Ensembl ID:ENSMUSG00000009097

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 A3|16 11.35 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 18581712 - 18586969

NM_011532 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17441858180518582548
7458451858281618582916
8469131858299918583066
91410691858351118583666
107012411858417618584347
124213431858512718585228
134417771858662818587061

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8862496Full LengthBC139474T-box 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035662  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011532 NP_035662   T-box

Related Sequences

 
mRNAGenPeptSwissProt
U15565 AAC52696 P70323
U57327 AAC53106 P70323
AF326960 AAG61088 P70323
BC139474 AAI39475 B9EII4
AF349658 AAK14407 P70323

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tbx1 NP_035662 R.norvegicus Tbx1 360737   NP_001101792 98
H.sapiens TBX1 6899 Gene Info NP_542378 92
C.elegans mls-1 186741   NP_498640 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)