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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ykt6, YKT6 homolog (S. Cerevisiae)
Sequence ID:NM_019661
Entrez Gene ID:56418
Ensembl ID:ENSMUSG00000002741

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 A1|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 5955885 - 5966075

NM_019661 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
124758557605856006
24833058592995859381
33143158611905861290
43253658623395862443
53760258626955862760
60370458645635864664
705247458660115867780

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3257673Full LengthBC006760YKT6 homolog (S. Cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062635  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019661 NP_062635 Q9CQW1 Synaptobrevin

Related Sequences

 
mRNAGenPeptSwissProt
AF076956 AAC26834 Q9CQW1
BC006760 AAH06760 Q9CQW1
AK002916 BAB22455 Q9CQW1
AK007486 BAB25062 Q9CQW1
AK147098 BAE27674 Q9CQW1
AK150472 BAE29589 Q9CQW1
AK159253 BAE34934 Q9CQW1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ykt6 NP_062635 R.norvegicus Ykt6 64351   NP_113880 96
H.sapiens YKT6 10652 Gene Info NP_006546 93
A.gambiae AgaP_AGAP000392 1271856   XP_310711 64
D.melanogaster Ykt6 31706   NP_572423 61
C.elegans synaptobrevin 176031   NP_498605 60
S.pombe ykt6 2539873   NP_596561 57
S.cerevisiae YKT6 853638   NP_012725 49
A.thaliana YKT61 835918   NP_001154785 47
A.thaliana ATYKT62 835930   NP_200626 45
N.crassa NCU08973 3875158   XP_959001 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)