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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Copz1, coatomer protein complex, subunit zeta 1
Sequence ID:NM_019817
Entrez Gene ID:56447
Ensembl ID:ENSMUSG00000060992

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F3|15 6.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 103272917 - 103299864

NM_019817 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
124103103348103103371
2593103119531103119599
94175103121105103121186
176267103121759103121850
268323103125152103125207
324401103126963103127040
402453103127164103127215
454492103128317103128355
4931664103129123103130294

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3492292Full LengthBC110679coatomer protein complex, subunit zeta 1
4954031Full LengthBC025041coatomer protein complex, subunit zeta 1
5691652Full LengthBC058524coatomer protein complex, subunit zeta 1
30441470Full LengthBC085314coatomer protein complex, subunit zeta 1
3493010IncompleteBC002246coatomer protein complex, subunit zeta 1
30056264IncompleteBC052891coatomer protein complex, subunit zeta 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062791  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019817 NP_062791 P61924
Q542M2
Clat_adaptor_s

Related Sequences

 
mRNAGenPeptSwissProt
BC025041 AAH25041 Q8R3M1
BC058524 AAH58524 P61924
Q542M2
BC085314 AAH85314 P61924
Q542M2
AB037370 BAA90303 P61924
Q542M2
AK003302 BAB22703 P61924
Q542M2
AK083824 BAC39030 P61924
Q542M2
AK156758 BAE33841 P61924
Q542M2
AK167636 BAE39687 P61924
Q542M2
AK168382 BAE40310 P61924
Q542M2
AK168471 BAE40362 P61924
Q542M2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Copz1 NP_062791 H.sapiens COPZ1 22818 Gene Info NP_057141 100
R.norvegicus Copz1 315345   NP_001101587 100
D.melanogaster zetaCOP 39862   NP_648910 64
A.gambiae AgaP_AGAP006522 1277120   XP_316555 63
C.elegans F59E10.3 174675   NP_496338 57
A.thaliana AT1G60970 842388   NP_564767 47
A.thaliana AT3G09800 820138   NP_566358 46
A.thaliana AT4G08520 826411   NP_567337 46
S.cerevisiae RET3 856097   NP_015315 44
N.crassa NCU02538 3881803   XP_965669 44
S.pombe ret3 2539522   NP_588434 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)