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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Aspscr1, alveolar soft part sarcoma chromosome region, candidate 1 (human)
Sequence ID:NM_001164224
NM_026877
NM_198223
Entrez Gene ID:68938
Ensembl ID:ENSMUSG00000025142

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E2|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 120689297 - 120709442

 Exon Info From UCSC:
NM_001164224
NM_026877
NM_198223

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4976569Full LengthBC031153alveolar soft part sarcoma chromosome region, candidate 1 (human)
5008127Full LengthBC019177alveolar soft part sarcoma chromosome region, candidate 1 (human)
5101238Full LengthBC022115alveolar soft part sarcoma chromosome region, candidate 1 (human)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_937866  NP_081153  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164224 NP_001157696    
NM_026877 NP_081153 Q8VBT9 UBX
NM_198223 NP_937866   UBX

Related Sequences

 
mRNAGenPeptSwissProt
BC019177 AAH19177 Q8VBT9
BC022115 AAH22115 Q8VBT9
BC031153 AAH31153 Q8VBT9
AY349132 AAR01613 Q8VBT9
AY349133 AAR01614 Q8VBT9
AK004509 BAB23341 Q8VBT9
AK146061 BAE26870 Q8VBT9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Aspscr1 NP_081153 R.norvegicus Aspscr1 691026   XP_001076577 93
H.sapiens ASPSCR1 79058 Gene Info NP_076988 82
A.gambiae AgaP_AGAP000394 1271854   XP_310708 39
N.crassa NCU03303 3880629   XP_964480 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)