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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ppbp, Pro-platelet basic protein
Sequence ID:NM_023785
Entrez Gene ID:57349
Ensembl ID:ENSMUSG00000029372

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 E1|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 90768520 - 90770057

NM_023785 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12069119754391197748
2073369119807891198207
33710809119834291199085

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40053104Full LengthBC127043pro-platelet basic protein
40053105Full LengthBC127044pro-platelet basic protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_076274  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_023785 NP_076274 Q9EQI5 IL8

Related Sequences

 
mRNAGenPeptSwissProt
AF219112 AAG36786 Q9EQI5
BC127043 AAI27044 Q9EQI5
BC127044 AAI27045 Q9EQI5
AF278700 AAK69476 Q9EQI5
AK010273 BAB26811 Q9EQI5
AB042817 BAB83941 Q9EQI5
AK157077 BAE33955 Q9EQI5
AK157141 BAE33977 Q9EQI5
AK158061 BAE34343 Q9EQI5
AK171720 BAE42631 Q9EQI5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ppbp NP_076274 R.norvegicus Ppbp 246358   NP_714943 74
H.sapiens PPBP 5473 Gene Info NP_002695 55

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)