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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Sdf4, stromal cell derived factor 4
Sequence ID:NM_011341
Entrez Gene ID:20318
Ensembl ID:ENSMUSG00000029076

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 E2|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 155993389 - 156010318

NM_011341 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1421155367022155367442
422751155370297155370626
752888155373506155373642
8891002155374778155374891
10031161155382895155383053
11621337155383252155383427
13385174155383882155387718

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30534982Full LengthBC068152stromal cell derived factor 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035471  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011341 NP_035471 Q61112 efhand

Related Sequences

 
mRNAGenPeptSwissProt
U45977 AAB01812 Q61112
U45978 AAB01813 Q61112
BC068152 AAH68152 Q61112
D50461 BAA09052 Q61112
AK157860 BAE34238 Q61112
AK163400 BAE37334 Q61112
AK167113 BAE39261 Q61112

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sdf4 NP_035471 R.norvegicus Sdf4 155173   NP_569096 97
H.sapiens SDF4 51150 Gene Info NP_057260 87
D.melanogaster CG31475 42303   NP_732406 37
A.gambiae AgaP_AGAP002810 1273151   XP_312103 34
C.elegans C56C10.9 183859   NP_495338 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)