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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Serinc1, serine incorporator 1
Sequence ID:NM_019760
Entrez Gene ID:56442
Ensembl ID:ENSMUSG00000019877

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B4|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 57516738 - 57532470

NM_019760 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1515295723558357237097
153017605723916857239398
176119055723950357239647
190621665724276157243021
216723045724376657243903
230523845724412557244204
238525545724513057245299
255527165724747057247631
271728895725216257252334

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4506673Full LengthBC017148serine incorporator 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062734  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019760 NP_062734 Q9QZI8 Serinc

Related Sequences

 
mRNAGenPeptSwissProt
AF181685 AAD54421 Q9QZI8
BC017148 AAH17148 Q9QZI8
AK002847 BAB22403 Q9QZI8
AK005203 BAB23881 Q9QZI8
AK078632 BAC37344 Q8C5F9
AK088340 BAC40293 Q9QZI8
AK133668 BAE21775 Q9QZI8
AK133975 BAE21964 Q9QZI8
AK135359 BAE22504 Q9QZI8
AK141574 BAE24743 Q9QZI8
AK148745 BAE28654 Q9QZI8
AK159280 BAE34958 Q9QZI8
AK159436 BAE35082 Q9QZI8
AB029500 BAF94204 A9CLV6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Serinc1 NP_062734 R.norvegicus Serinc1 294421   NP_891996 98
H.sapiens SERINC1 57515 Gene Info NP_065806 96
A.gambiae AgaP_AGAP002569 1273397   XP_312367 50
C.elegans Y57E12AL.1 179093   NP_741561 46
D.melanogaster TMS1 39827   NP_648893 46
C.elegans R11H6.2 179964   NP_506611 45
N.crassa NCU07986 3878795   XP_962656 37
S.cerevisiae TMS1 851682   NP_010390 36
S.pombe SPAPB1A10.07c 2543369   NP_593521 36
A.thaliana AT3G06170 819791   NP_187268 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)