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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ldha, lactate dehydrogenase A
Sequence ID:NM_001136069
NM_010699
Entrez Gene ID:16828
Ensembl ID:ENSMUSG00000063229

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 B4|7 23.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 46845842 - 46855626

 Exon Info From UCSC:
NM_001136069
NM_010699

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4195220Full LengthBC094019lactate dehydrogenase A
30700835Full LengthBC094428lactate dehydrogenase A
3491850IncompleteBC005509lactate dehydrogenase A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034829  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001136069 NP_001129541      
NM_010699 NP_034829 Q564E2
P06151
EC 1.1.1.27 Ldh_1_N
Ldh_1_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U13687 AAA21466 Q564E2
P06151
EC 1.1.1.27
M17516 AAA39424 P06151 EC 1.1.1.27
BC005509 AAH05509 Q99K20  
BC066858 AAH66858 Q6NXW3  
BC094019 AAH94019 Q564E2
P06151
EC 1.1.1.27
BC094428 AAH94428 Q564E2  
AK089929 BAC41000 Q564E2
P06151
EC 1.1.1.27
AK146121 BAE26915 Q3THB4  
AK146980 BAE27583 Q3UIC3  
AK149919 BAE29167 Q3UDU4  
AK150156 BAE29347 Q564E2
P06151
EC 1.1.1.27
AK167789 BAE39819 Q564E2
P06151
EC 1.1.1.27
AK167944 BAE39947 Q3TI99  
AK168346 BAE40283 Q3THB4  
AK168920 BAE40733 Q564E2
P06151
EC 1.1.1.27
AK170386 BAE41760 Q564E2
P06151
EC 1.1.1.27
AK170708 BAE41969 Q3TCI7  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ldha NP_001129541 R.norvegicus Ldha 24533   NP_058721 97
H.sapiens LDHA 3939 Gene Info NP_001158886 91
D.melanogaster ImpL3 45880   NP_476581 61
A.gambiae AgaP_AGAP004880 1275079   XP_314306 61
C.elegans ldh-1 174798   NP_496503 59
A.thaliana AT4G17260 827440   NP_193459 55
N.crassa NCU00720 3880705   XP_964554 36
S.pombe SPAC186.08c 2542569   NP_595026 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)