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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Flot1, flotillin 1
Sequence ID:NM_008027
Entrez Gene ID:14251
Ensembl ID:ENSMUSG00000059714

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35823820 - 35832539

 Exon Info From UCSC:
NM_008027

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3158071Full LengthBC004647flotillin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032053  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008027 NP_032053 Q540I4
O08917
Band_7
Flotillin

Related Sequences

 
mRNAGenPeptSwissProt
U90435 AAB58583 Q540I4
O08917
AF145044 AAD33945 Q540I4
O08917
BC004647 AAH04647 Q540I4
O08917
AY167925 AAN86639 Q540I4
O08917
AK150692 BAE29771 Q540I4
O08917
AK150827 BAE29889 Q540I4
O08917
AK167323 BAE39425 Q3TJS0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Flot1 NP_032053 R.norvegicus Flot1 64665   NP_073192 100
H.sapiens FLOT1 10211 Gene Info NP_005794 98
A.gambiae AgaP_AGAP007494 1269732   XP_308381 67
D.melanogaster Flo 36726   NP_477358 65

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)