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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sec13, SEC13 homolog (S. cerevisiae)
Sequence ID:NM_024206
Entrez Gene ID:110379
Ensembl ID:ENSMUSG00000030298

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 E3|6 52.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 113728051 - 113740681

NM_024206 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1412113678045113678456
413559113679589113679735
560683113680328113680451
684817113680767113680900
818951113684539113684672
9521103113685050113685201
11041219113686365113686480
12201264113687947113687991
12651301113690638113690674

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3590767Full LengthBC002128SEC13 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077168  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024206 NP_077168 Q9D1M0 WD40

Related Sequences

 
mRNAGenPeptSwissProt
BC002128 AAH02128 Q9D1M0
AK003354 BAB22732 Q9D1M0
AK009755 BAB26480 Q9D1M0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sec13 NP_077168 R.norvegicus Sec13 297522   NP_001006979 100
H.sapiens SEC13 6396 Gene Info NP_899195 97
A.gambiae AgaP_AGAP003183 1273855   XP_312881 67
D.melanogaster sec13 44437   NP_651977 61
A.thaliana AT2G30050 817556   NP_180566 57
A.thaliana AT3G01340 821216   NP_001030616 55
S.cerevisiae SEC13 850905   NP_013309 53
S.pombe sec13 2540716   NP_596692 52
N.crassa NCU04063 3873801   XP_957678 50
C.elegans npp-20 176957   NP_500086 43
P.falciparum PFL1480w 811348   XP_001350702 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)