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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. 1110008F13Rik, RIKEN cDNA 1110008F13 gene
Sequence ID:NM_026124
Entrez Gene ID:67388
Ensembl ID:ENSMUSG00000027637

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2|2 H2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 156863166 - 156873560

NM_026124 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1296156688857156689152
297400156690992156691095
401530156698073156698202
5311048156698778156699295

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5125733Full LengthBC019445RIKEN cDNA 1110008F13 gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080400  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026124 NP_080400 Q9CQT9 Rab5ip
NM_029983 NP_084259 Q8R4L0  

Related Sequences

 
mRNAGenPeptSwissProt
BC019445 AAH19445 Q9CQT9
BC052655 AAH52655 Q7TMX7
AF287467 AAL38196 Q8R4L0
AF434990 AAL86403 Q8R4L0
AK002452 BAB22111 Q9CQT9
AK003568 BAB22864 Q9CQT9
AK020837 BAB32223 Q8R4L0
AK030877 BAC27168 Q8R4L0
AK088672 BAC40495 Q8R4L0
AK138709 BAE23754 Q8R4L0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus 1110008F13Rik NP_080400 H.sapiens C20orf24 55969 Gene Info NP_061328 98
R.norvegicus RGD1307752 296315   NP_001013944 98
D.melanogaster CG12107 35712   NP_610314 63
A.gambiae AgaP_AGAP004838 1275128   XP_314356 52
A.gambiae AgaP_AGAP012695 1268980   XP_307560 52
C.elegans F44E7.9 185741   NP_504519 44
A.thaliana AT5G59410 836060   NP_200749 40
A.thaliana AT2G29020 817451   NP_565679 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)