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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lrrtm1, leucine rich repeat transmembrane neuronal 1
Sequence ID:NM_028880
Entrez Gene ID:74342
Ensembl ID:ENSMUSG00000060780

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 C3|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 77242717 - 77245511

NM_028880 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15067719271077193215
50725217719349677195510

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5321979Full LengthBC027803leucine rich repeat transmembrane neuronal 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083156  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028880 NP_083156 Q8K377 LRR_1

Related Sequences

 
mRNAGenPeptSwissProt
BC027803 AAH27803 Q8K377
AY182025 AAO67546 Q8K377
AK053345 BAC35354 Q8K377
AK053364 BAC35363 Q8K377
AK136857 BAE23148 Q8K377

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lrrtm1 NP_083156 R.norvegicus LRRTM1 679668   NP_001102844 99
H.sapiens LRRTM1 347730 Gene Info NP_849161 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)