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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Hdgf, hepatoma-derived growth factor
Sequence ID:NM_008231
Entrez Gene ID:15191
Ensembl ID:ENSMUSG00000004897

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F1|3 61.8 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 87906414 - 87915709

NM_008231 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13948771024287710635
3954718771701287717088
4726108771723487717372
6117968771797387718158
79710148771839487718611
101522458771882387720053

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2609261Full LengthBC005713hepatoma-derived growth factor
4163897Full LengthBC021654hepatoma-derived growth factor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032257  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008231 NP_032257 P51859 PWWP

Related Sequences

 
mRNAGenPeptSwissProt
AF251787 AAF65469 P51859
BC005713 AAH05713 P51859
BC021654 AAH21654 P51859
D63707 BAA09838 P51859
AK017863 BAB30979 P51859
AK029475 BAC26466 P51859
AK076021 BAC36126 P51859

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hdgf NP_032257 R.norvegicus Hdgf 114499   NP_446159 97
H.sapiens HDGF 3068 Gene Info NP_004485 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)