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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lmo4, LIM domain only 4
Sequence ID:NM_001161769
NM_001161770
NM_010723
Entrez Gene ID:16911
Ensembl ID:ENSMUSG00000028266

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3 H2|3 73.1 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 144193893 - 144202048

 Exon Info From UCSC:
NM_001161769
NM_001161770
NM_010723

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2811636Full LengthBC003488LIM domain only 4
3589532Full LengthBC010278LIM domain only 4
6487478Full LengthBC100382LIM domain only 4
3498069IncompleteBC004661LIM domain only 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034853  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001161769 NP_001155241    
NM_001161770 NP_001155242    
NM_010723 NP_034853 P61969
Q542S1
LIM

Related Sequences

 
mRNAGenPeptSwissProt
AF074600 AAC62958 P61969
Q542S1
AF096996 AAC83789 P61969
Q542S1
AF102817 AAC98510 P61969
Q542S1
BC003488 AAH03488 P61969
Q542S1
BC010278 AAH10278 P61969
Q542S1
BC100382 AAI00383 P61969
Q542S1
AK080534 BAC37938 P61969
Q542S1
AK138278 BAE23609 P61969
Q542S1
AK159590 BAE35210 P61969
Q542S1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lmo4 NP_034853 H.sapiens LMO4 8543 Gene Info NP_006760 100
R.norvegicus Lmo4 362051   NP_001009708 100
D.melanogaster CG5708 34361   NP_609359 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)