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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Herpud1, homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
Sequence ID:NM_022331
Entrez Gene ID:64209
Ensembl ID:ENSMUSG00000031770

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 C5|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 94386499 - 94395358

NM_022331 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12399691039996910637
2403179691325596913332
3183929691342096913494
3935239691461796914747
5246469691563196915753
6479979691607396916423
99811039691769596917800
110418719691849096919257

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4236803Full LengthBC013523homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_071726  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022331 NP_071726 Q3TMN9
Q9JJK5
ubiquitin

Related Sequences

 
mRNAGenPeptSwissProt
BC013523 AAH13523 Q91WR9
AB034991 BAB07892 Q3TMN9
Q9JJK5
AK081688 BAC38293 Q8C4N0
AK172874 BAD32152 Q6A0E4
AK159500 BAE35133 Q3TMN9
Q9JJK5
AK165832 BAE38402 Q3TMN9
Q9JJK5
AJ320519 CAC48391 Q921B3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Herpud1 NP_071726 R.norvegicus Herpud1 85430   NP_445975 95
H.sapiens HERPUD1 9709 Gene Info NP_055500 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)