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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tarbp2, TAR (HIV) RNA binding protein 2
Sequence ID:NM_001253795
NM_009319
Entrez Gene ID:21357
Ensembl ID:ENSMUSG00000023051

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F|15 61.7 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 102518191 - 102523674

Transcript StartTranscript EndChromosomal Start Chromosomal End
1357102348676102349032
358527102349552102349721
528630102350905102351007
631723102351551102351643
724796102352154102352226
797914102352411102352528
9151042102352854102352981
10431244102353279102353480
12451736102353615102354106

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3489376Full LengthBC002028TAR (HIV) RNA binding protein 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033345  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001253795 NP_001240724    
NM_009319 NP_033345 P97473 dsrm

Related Sequences

 
mRNAGenPeptSwissProt
U79962 AAB38885 P97473
BC002028 AAH02028 P97473
AK144205 BAE25768 Q3UNH9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tarbp2 NP_033345 R.norvegicus Tarbp2 363006   NP_001030113 97
H.sapiens TARBP2 6895 Gene Info NP_599150 95
D.melanogaster loqs 34751   NP_609646 37
A.gambiae AgaP_AGAP009781 1279194   XP_318876 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)