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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prph2, peripherin 2
Sequence ID:NM_008938
Entrez Gene ID:19133
Ensembl ID:ENSMUSG00000023978

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 C|17 18.84 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 46910477 - 46920347

NM_008938 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17934704743347048225
79410404705671247056958
104126324706028347061874

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5363367Full LengthBC028958peripherin 2
6490224Full LengthBC085266peripherin 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032964  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008938 NP_032964 Q3UWK3
P15499
Tetraspannin

Related Sequences

 
mRNAGenPeptSwissProt
BC028958 AAH28958 Q3UWK3
P15499
BC085266 AAH85266 Q3UWK3
P15499
AK044549 BAC31975 Q8C8S8
AK136280 BAE22911 Q3UWK3
P15499
X14770 CAA32878 Q3UWK3
P15499

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prph2 NP_032964 R.norvegicus Prph2 25534   NP_037153 97
H.sapiens PRPH2 5961 Gene Info NP_000313 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)