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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Arl1, ADP-ribosylation factor-like 1
Sequence ID:NM_025859
Entrez Gene ID:104303
Ensembl ID:ENSMUSG00000060904

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 C1|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 88731394 - 88744082

NM_025859 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11518819415888194308
1522898819628788196424
2903718819864288198723
3724838819983588199946
4846628820465188204829
6638428820576788205946

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1248346Full LengthBC096684ADP-ribosylation factor-like 1
40126213Full LengthBC116894ADP-ribosylation factor-like 1
40126215Full LengthBC116896ADP-ribosylation factor-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080135  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025859 NP_080135 Q9D7H9 Arf

Related Sequences

 
mRNAGenPeptSwissProt
BC096684 AAH96684 Q4V9U3
BC116894 AAI16895 Q14AC7
BC116896 AAI16897 Q14AC7
AK009226 BAB26149 Q9D7H9
AK010732 BAB27148 P61211
AK018138 BAB31089 P61211
AK088330 BAC40286 P61211
AK167748 BAE39784 Q3TIR2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Arl1 NP_080135 R.norvegicus Arl1 64187   NP_071780 100
H.sapiens ARL1 400 Gene Info NP_001168 99
D.melanogaster Arf72A 39745   NP_524098 79
A.gambiae AgaP_AGAP011730 1280909   XP_320779 78
C.elegans arl-1 174375   NP_495816 73
N.crassa NCU08989 3875174   XP_959017 66
A.thaliana ARF3 817014   NP_850057 66
S.cerevisiae ARL1 852462   NP_009723 64
P.falciparum PF10_0337 810494   XP_001347621 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)