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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Xrn1, 5'-3' exoribonuclease 1
Sequence ID:NM_011916
Entrez Gene ID:24127
Ensembl ID:ENSMUSG00000032410

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:9|9 E4

Chromosomal Position (from UCSC)

Chromosomal Position:9: 95971744 - 95975359

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062868Full LengthBC1569765'-3' exoribonuclease 1
30013883IncompleteBC0541085'-3' exoribonuclease 1
30099301IncompleteBC1005785'-3' exoribonuclease 1
100062413BC1561335'-3' exoribonuclease 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036046  

Protein Infomation

NM_011916 NP_036046   XRN_N

Related Sequences

BC156133 AAI56134  
BC156976 AAI56977  
D88026 BAA21563 P97789
AK142311 BAE25024 P97789
AK162848 BAE37081 P97789
AK169840 BAE41404 P97789
X91617 CAA62819 P97789
X91617 CAA62820 P97789

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Xrn1 NP_036046 R.norvegicus Xrn1 300944   XP_002730002 94
H.sapiens XRN1 54464 Gene Info NP_061874 89
C.elegans xrn-1 175059   NP_496945 43
D.melanogaster pcm 32935   NP_001162796 43
A.gambiae AgaP_AGAP004430 1274572   XP_313715 42
S.pombe exo2 2542204   NP_593482 41
N.crassa NCU06678 3877063   XP_960925 40
S.cerevisiae KEM1 852702   NP_011342 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)