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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Agap1, ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Sequence ID:NM_001037136
NM_178119
Entrez Gene ID:347722
Ensembl ID:ENSMUSG00000055013

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 D|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 89766308 - 89890951

 Exon Info From UCSC:
NM_001037136
NM_178119

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069481Full LengthBC172673ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
4917989IncompleteBC096588centaurin, gamma 2
100061682BC156262ArfGAP with GTPase domain, ankyrin repeat and PH domain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_835220  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001037136 NP_001032213    
NM_178119 NP_835220 Q8BXK8 Ank
PH
ArfGap
Miro

Related Sequences

 
mRNAGenPeptSwissProt
BC156262 AAI56263 Q8BXK8
BC172673 AAI72673  
AK035494 BAC29078 Q8BXK8
AK046523 BAC32770 Q8BXK8
AK083235 BAC38820 Q8C418
AK129289 BAC98099 Q8BXK8
AK147503 BAE27957 Q8BXK8
AK147521 BAE27969 Q3UH88

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Agap1 NP_001032213 H.sapiens AGAP1 116987 Gene Info NP_055729 98
R.norvegicus Agap1 316611   NP_001101700 93
A.gambiae AgaP_AGAP009160 1280116   XP_319921 58
D.melanogaster cenG1A 34803   NP_723849 56
C.elegans cnt-2 176490   NP_001022837 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)