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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Clptm1, cleft lip and palate associated transmembrane protein 1
Sequence ID:NM_019649
Entrez Gene ID:56457
Ensembl ID:ENSMUSG00000002981

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A3|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 19633249 - 19665011

 Exon Info From UCSC:
NM_019649

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4193279Full LengthBC022172cleft lip and palate associated transmembrane protein 1
3588664IncompleteBC018389cleft lip and palate associated transmembrane protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062623  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019649 NP_062623 Q8VBZ3 CLPTM1

Related Sequences

 
mRNAGenPeptSwissProt
BC018389 AAH18389 Q8VBZ3
BC022172 AAH22172 Q8VBZ3
D67067 BAA19836 Q8VBZ3
AK148080 BAE28332 Q8VBZ3
AK152410 BAE31196 Q8VBZ3
AK152809 BAE31514 Q8VBZ3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clptm1 NP_062623 R.norvegicus Clptm1 292696   NP_001099702 99
H.sapiens CLPTM1 1209 Gene Info NP_001285 95
A.gambiae AgaP_AGAP007926 1278029   XP_317556 54
D.melanogaster CG3702 33628   NP_608819 54
C.elegans C36B7.6 180976   NP_509196 53
C.elegans R166.2 174620   NP_496269 51
A.thaliana AT5G23575 832423   NP_680213 45
A.thaliana AT5G08500 830749   NP_196467 44
N.crassa NCU06710 3877052   XP_960890 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)