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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Atg4b, autophagy related 4B, cysteine peptidase
Sequence ID:NM_174874
Entrez Gene ID:66615
Ensembl ID:ENSMUSG00000026280

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1 D|1

Chromosomal Position (from UCSC)

Chromosomal Position:1: 93768052 - 93787933

 Exon Info From UCSC:
NM_174874

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4237950Full LengthBC027184autophagy-related 4B (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_777363  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_174874 NP_777363   Peptidase_C54

Related Sequences

 
mRNAGenPeptSwissProt
BC027184 AAH27184 Q8BGE6
Q3UNF6
AK028712 BAC26079 Q8BGE6
AK031570 BAC27455 Q8BGE6
AK075796 BAC35965 Q8BGE6
AK088811 BAC40587 Q8BGE6
Q3UNF6
AK129242 BAC98052 Q8BGE6
AK144239 BAE25791 Q3UNF6
AJ504653 CAD43220 Q8BGE6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atg4b NP_777363 R.norvegicus Atg4b 316640   NP_001020882 96
H.sapiens ATG4B 23192 Gene Info NP_037457 95
A.thaliana AT3G59950 825165   NP_191554 38
A.thaliana AT2G44140 819020   NP_850412 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)