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Gene Info

Gene Information For:Mm. Samm50, sorting and assembly machinery component 50 homolog (S. cerevisiae)
Sequence ID:NM_178614
Entrez Gene ID:68653
Ensembl ID:ENSMUSG00000022437

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 E2|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 84192277 - 84214303

 Exon Info From UCSC:
NM_178614

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8733927Full LengthBC119178sorting and assembly machinery component 50 homolog (S. cerevisiae)
8733929Full LengthBC119180sorting and assembly machinery component 50 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_848729  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_178614 NP_848729 Q8BGH2 Bac_surface_Ag

Related Sequences

 
mRNAGenPeptSwissProt
BC119178 AAI19179 Q8BGH2
BC119180 AAI19181 Q8BGH2
AK039949 BAC30484 Q8BGH2
AK041783 BAC31062 Q8BGH2
AK084395 BAC39174 Q8BGH2
AK144975 BAE26162 Q8BGH2
AK159740 BAE35333 Q8BGH2
AK161378 BAE36358 Q8BGH2
AK167806 BAE39833 Q8BGH2
AK168510 BAE40393 Q8BGH2
AK169066 BAE40853 Q8BGH2
AK169351 BAE41101 Q8BGH2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Samm50 NP_848729 R.norvegicus Samm50 300111   NP_001004241 98
H.sapiens SAMM50 25813 Gene Info NP_056195 96
C.elegans gop-3 175723   NP_498119 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)