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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tkt, transketolase
Sequence ID:NM_009388
Entrez Gene ID:21881
Ensembl ID:ENSMUSG00000021957

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14|14 B1

Chromosomal Position (from UCSC)

Chromosomal Position:14: 30558804 - 30573615

 Exon Info From UCSC:
NM_009388

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6413263Full LengthBC055336transketolase

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033414  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009388 NP_033414 P40142 EC 2.2.1.1 Transketolase_N
Transket_pyr
Transketolase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U05809 AAC52443 P40142 EC 2.2.1.1
AF195533 AAG28459 P40142 EC 2.2.1.1
BC055336 AAH55336 P40142 EC 2.2.1.1
AK002627 BAB22242 P40142 EC 2.2.1.1
AK012794 BAB28474 P40142 EC 2.2.1.1
AK030446 BAC26968 P40142 EC 2.2.1.1
AK140965 BAE24531 P40142 EC 2.2.1.1
AK144146 BAE25728 P40142 EC 2.2.1.1
AK146157 BAE26940 P40142 EC 2.2.1.1
AK150139 BAE29335 P40142 EC 2.2.1.1
AK150769 BAE29835 P40142 EC 2.2.1.1
AK150844 BAE29902 P40142 EC 2.2.1.1
AK150856 BAE29911 P40142 EC 2.2.1.1
AK152460 BAE31238 P40142 EC 2.2.1.1
AK159922 BAE35484 P40142 EC 2.2.1.1
AK167084 BAE39242 P40142 EC 2.2.1.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tkt NP_033414 R.norvegicus Tkt 64524   NP_072114 98
H.sapiens TKT 7086 Gene Info NP_001055 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)