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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sra1, steroid receptor RNA activator 1
Sequence ID:NM_001164406
NM_025291
NR_028355
Entrez Gene ID:24068
Ensembl ID:ENSMUSG00000006050

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18 B2|18

Chromosomal Position (from UCSC)

Chromosomal Position:18: 36667245 - 36670097

 Exon Info From UCSC:
NM_001164406
NM_025291

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2646489Full LengthBC048362steroid receptor RNA activator 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079567  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164406 NP_001157878    
NM_025291 NP_079567 Q80VJ2 SRA1

Related Sequences

 
mRNAGenPeptSwissProt
BC026480 AAH26480 Q80VJ2
BC048362 AAH48362 Q80VJ2
AK007302 BAB24943 Q80VJ2
AK010375 BAB26893 Q80VJ2
AK154232 BAE32451 Q80VJ2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sra1 NP_079567 R.norvegicus Sra1 252891   NP_899158 93
H.sapiens SRA1 10011 Gene Info NP_001030312 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)